esearch -F biology
[ Results for search key : biology ]
[ Applications found : 49 ]
* sci-biology/aaindex
Latest version available: 6.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 658 kB
Homepage: http://www.genome.ad.jp/aaindex
Description: Amino acid indices and similarity matrices
License: public-domain
* sci-biology/ariadne
Latest version available: 1.3-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 67 kB
Homepage: http://www.well.ox.ac.uk/ariadne/
Description: Protein sequences and profiles comparison
License: as-is
* sci-biology/bioperl
Latest version available: 1.4
Latest version installed: [ Not Installed ]
Size of downloaded files: 4,125 kB
Homepage: http://www.bioperl.org/
Description: collection of tools for bioinformatics, genomics and life science research
License: Artistic GPL-2
* sci-biology/bioperl-pipeline [ Masked ]
Latest version available: 0.1
Latest version installed: [ Not Installed ]
Size of downloaded files: 619 kB
Homepage: http://www.biopipe.org/
Description: A collection of tools for bioinformatics, genomics and life science research: Biopipe
License: Artistic GPL-2
* sci-biology/bioperl-run
Latest version available: 1.4
Latest version installed: [ Not Installed ]
Size of downloaded files: 811 kB
Homepage: http://www.bioperl.org/
Description: A collection of tools for bioinformatics, genomics and life science research: subset required to run analyses
License: Artistic GPL-2
* sci-biology/biopython
Latest version available: 1.40b
Latest version installed: [ Not Installed ]
Size of downloaded files: 2,755 kB
Homepage: http://www.biopython.org
Description: Biopython - Python modules for computational molecular biology
License: as-is
* sci-biology/cbcanalyzer [ Masked ]
Latest version available: 1.0.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 1,689 kB
Homepage: http://cbcanalyzer.bioapps.biozentrum.uni-wuerzburg.de/
Description: Creates phylogenetic trees measuring compensatory base changes
License: GPL-2
* sci-biology/clustalw
Latest version available: 1.83-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 162 kB
Homepage: http://www.embl-heidelberg.de/~seqanal/
Description: General purpose multiple alignment program for DNA and proteins
License: clustalw
* sci-biology/clustalx
Latest version available: 1.83-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 840 kB
Homepage: http://www-igbmc.u-strasbg.fr/BioInfo/ClustalX/
Description: Graphical interface for the ClustalW multiple alignment program
License: public-domain
* sci-biology/cutg
Latest version available: 145
Latest version installed: [ Not Installed ]
Size of downloaded files: 129,035 kB
Homepage: http://www.kazusa.or.jp/codon/
Description: Codon usage tables calculated from GenBank
License: public-domain
* sci-biology/ecell [ Masked ]
Latest version available: 3.1.102-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 3,129 kB
Homepage: http://ecell.sourceforge.net/
Description: Software suite for modelling biological cells
License: GPL-2
* sci-biology/elph
Latest version available: 0.1.5
Latest version installed: [ Not Installed ]
Size of downloaded files: 149 kB
Homepage: http://www.tigr.org/software/ELPH/index.shtml
Description: Estimated Locations of Pattern Hits - Motif finder program
License: Artistic
* sci-biology/embassy
Latest version available: 2.10.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 0 kB
Homepage: http://www.emboss.org/
Description: A meta-package for installing all EMBASSY packages (EMBOSS add-ons)
License: GPL-2 freedist
* sci-biology/embassy-construct
Latest version available: 1.0.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,227 kB
Homepage: http://emboss.sourceforge.net/
Description: Sequence alignment add-on package for EMBOSS
License: GPL-2
* sci-biology/embassy-domainatrix
Latest version available: 1.0.0-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,419 kB
Homepage: http://emboss.sourceforge.net/
Description: Protein 3D analysis add-on package for EMBOSS
License: GPL-2
* sci-biology/embassy-emnu
Latest version available: 1.05-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,213 kB
Homepage: http://emboss.sourceforge.net/
Description: EMBOSS Menu is Not UNIX - Simple menu of EMBOSS applications
License: GPL-2
* sci-biology/embassy-esim4
Latest version available: 1.0.0-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,247 kB
Homepage: http://emboss.sourceforge.net/
Description: EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
License: GPL-2
* sci-biology/embassy-hmmer
Latest version available: 2.1.1-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,420 kB
Homepage: http://emboss.sourceforge.net/
Description: EMBOSS integrated version of HMMER - Biological sequence analysis with profile HMMs
License: GPL-2
* sci-biology/embassy-meme
Latest version available: 2.3.1-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,286 kB
Homepage: http://emboss.sourceforge.net/
Description: EMBOSS integrated version of MEME - Multiple Em for Motif Elicitation
License: GPL-2
* sci-biology/embassy-mse
Latest version available: 1.0.0-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,276 kB
Homepage: http://emboss.sourceforge.net/
Description: EMBOSS integrated version of MSE - Multiple Sequence Editor
License: GPL-2
* sci-biology/embassy-phylip
Latest version available: 3.57c-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,704 kB
Homepage: http://emboss.sourceforge.net/
Description: EMBOSS integrated version of the PHYLogeny Inference Package
License: freedist
* sci-biology/embassy-topo
Latest version available: 1.0.0-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 16,215 kB
Homepage: http://emboss.sourceforge.net/
Description: EMBOSS integrated version of TOPO - Transmembrane protein display
License: GPL-2
* sci-biology/emboss
Latest version available: 2.10.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 15,880 kB
Homepage: http://emboss.sourceforge.net/
Description: The European Molecular Biology Open Software Suite - A sequence analysis package
License: GPL-2 LGPL-2
* sci-biology/emboss-kaptain
Latest version available: 0.97-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 145 kB
Homepage: http://userpage.fu-berlin.de/~sgmd/
Description: Graphical interfaces for EMBOSS and EMBASSY programs
License: GPL-1
* sci-biology/foldingathome
Latest version available: 5.0.2-r3
Latest version installed: [ Not Installed ]
Size of downloaded files: 243 kB
Homepage: http://folding.stanford.edu/
Description: Help simulate protein folding at home
License: as-is
* sci-biology/generic-genome-browser [ Masked ]
Latest version available: 1.58
Latest version installed: [ Not Installed ]
Size of downloaded files: 1,179 kB
Homepage: http://www.gmod.org
Description: The generic genome browser provides a display of genomic annotations on interactive web pages
License: Artistic
* sci-biology/gibbs
Latest version available: 1995.9
Latest version installed: [ Not Installed ]
Size of downloaded files: 584 kB
Homepage: http://www.people.fas.harvard.edu/~junliu/index1.html
Description: A Gibbs sampling algorithm for local alignment of subtle sequence signals in multiple protein sequences.
License: public-domain
* sci-biology/hmmer
Latest version available: 2.3.2-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 1,000 kB
Homepage: http://hmmer.wustl.edu/
Description: Sequence analysis using profile hidden Markov models
License: GPL-2
* sci-biology/mrbayes
Latest version available: 3.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 2,156 kB
Homepage: http://morphbank.ebc.uu.se/mrbayes/
Description: Bayesian Inference of Phylogeny
License: as-is
* sci-biology/ncbi-tools
Latest version available: 20041020-r1
Latest version installed: [ Not Installed ]
Size of downloaded files: 13,800 kB
Homepage: http://www.ncbi.nlm.nih.gov/
Description: Development toolkit and applications (BLAST, entrez, ddv, udv, sequin...) for computational biology
License: public-domain
* sci-biology/njplot
Latest version available: 20050109
Latest version installed: [ Not Installed ]
Size of downloaded files: 36 kB
Homepage: http://pbil.univ-lyon1.fr/software/njplot.html
Description: A phylogenetic tree drawing program which supports tree rooting
License: public-domain
* sci-biology/phylip
Latest version available: 3.63
Latest version installed: [ Not Installed ]
Size of downloaded files: 587 kB
Homepage: http://evolution.genetics.washington.edu/phylip.html
Description: PHYLIP - The PHYLogeny Inference Package
License: freedist
* sci-biology/primer3
Latest version available: 1.0.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 914 kB
Homepage: http://frodo.wi.mit.edu/primer3/primer3_code.html
Description: Design primers for PCR reactions.
License: whitehead
* sci-biology/prints
Latest version available: 37.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 25,988 kB
Homepage: http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/
Description: A protein motif fingerprint database
License: public-domain
* sci-biology/prosite
Latest version available: 19.1
Latest version installed: [ Not Installed ]
Size of downloaded files: 3,402 kB
Homepage: http://ca.expasy.org/prosite
Description: A protein families and domains database
License: swiss-prot
* sci-biology/qrna
Latest version available: 2.0.2c
Latest version installed: [ Not Installed ]
Size of downloaded files: 13,716 kB
Homepage: http://www.genetics.wustl.edu/eddy/software/
Description: Prototype ncRNA genefinder
License: GPL-2
* sci-biology/readseq
Latest version available: 19930201
Latest version installed: [ Not Installed ]
Size of downloaded files: 53 kB
Homepage: http://iubio.bio.indiana.edu/soft/molbio/readseq/
Description: Reads and writes nucleic/protein sequences in various formats.
License: public-domain
* sci-biology/rebase
Latest version available: 505
Latest version installed: [ Not Installed ]
Size of downloaded files: 175 kB
Homepage: http://rebase.neb.com
Description: A restriction enzyme database
License: public-domain
* sci-biology/rnaview
Latest version available: 20040713
Latest version installed: [ Not Installed ]
Size of downloaded files: 423 kB
Homepage: http://beta-ndb.rutgers.edu/services/download/index.html#rnaview
Description: Generates 2D displays of RNA/DNA secondary structures with tertiary interactions
License: public-domain
* sci-biology/seaview
Latest version available: 20041220
Latest version installed: [ Not Installed ]
Size of downloaded files: 112 kB
Homepage: http://pbil.univ-lyon1.fr/software/seaview.html
Description: A graphical multiple sequence alignment editor
License: public-domain
* sci-biology/sim4
Latest version available: 20030921
Latest version installed: [ Not Installed ]
Size of downloaded files: 59 kB
Homepage: http://globin.cse.psu.edu/html/docs/sim4.html
Description: A program to align cDNA and genomic DNA
License: GPL-2
* sci-biology/staden
Latest version available: 1.5.3
Latest version installed: [ Not Installed ]
Size of downloaded files: 30,942 kB
Homepage: http://staden.sourceforge.net
Description: The Staden Package - Biological sequence handling and analysis
License: staden
* sci-biology/t-coffee
Latest version available: 2.26
Latest version installed: [ Not Installed ]
Size of downloaded files: 880 kB
Homepage: http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html
Description: A multiple sequence alignment package
License: t-coffee
* sci-biology/transfac
Latest version available: 3.2
Latest version installed: [ Not Installed ]
Size of downloaded files: 3,267 kB
Homepage: http://www.gene-regulation.com/pub/databases.html
Description: A database of eucaryotic transcription factors
License: public-domain
* sci-biology/tree-puzzle
Latest version available: 5.2
Latest version installed: [ Not Installed ]
Size of downloaded files: 854 kB
Homepage: http://www.tree-puzzle.de
Description: Maximum likelihood analysis for nucleotide, amino acid, and two-state data.
License: GPL-2
* sci-biology/treeviewx
Latest version available: 0.5
Latest version installed: [ Not Installed ]
Size of downloaded files: 385 kB
Homepage: http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/
Description: A phylogenetic tree viewer
License: GPL-2
* sci-biology/trnascan-se
Latest version available: 1.23
Latest version installed: [ Not Installed ]
Size of downloaded files: 470 kB
Homepage: http://selab.wustl.edu/cgi-bin/selab.pl?mode=software%22#trnascan
Description: tRNA detection in large-scale genome sequences
License: GPL-2
* sci-biology/vienna-rna
Latest version available: 1.4
Latest version installed: [ Not Installed ]
Size of downloaded files: 471 kB
Homepage: http://www.tbi.univie.ac.at/~ivo/RNA/
Description: Vienna RNA Package - RNA secondary structure prediction and comparison
License: vienna-rna
* sci-biology/wise
Latest version available: 2.2.0
Latest version installed: [ Not Installed ]
Size of downloaded files: 2,058 kB
Homepage: http://www.ebi.ac.uk/Wise2/
Description: Intelligent algorithms for DNA searches
License: BSD